How to find Structural Variations using RNA-Seq?

12 December 2013 0 7K Report

I'm quite new in NGS. I'm looking for tools/stuff/idea to find Structural Variation (large deletion or tandem duplication) using RNA-Seq dataset (Illumina 100bp pair-end reads).

Could I use delly? This algorithm should work with DNA-Seq, may I use it with my RNA-Seq dataset?

Thank you for any help you can provide.

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