How to do docking by autodock vina for RNA?

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Tanuj Sharma

Dear Harsha

for RNA, I would suggest using HADDOCK or other tools which are more optimized for docking RNA. The atomic constraints used in autodock are not optimized for RNA ligand docking, that is why there is variability in results.

Harsha Agrawal

how to do docking by HADDOCK? Also, How to validate a result