Hello, I want to know, How to design gene specific primers for A, B & D genome in case of wheat ? What about annealing temp & cycles use to amplify perfectly?Thanks
http://www.bioinformatics.nl/cgi-bin/primer3plus/primer3plus.cgi here you paste any sequence that your interested in (your gene of interest in your case ). You'd have to paste the nucleotide sequence of your whole gene in, hence it does not differentiate between.
If this isn't what your looking for, here is a summary of the online primer design tools available: