I found a case control sample's genomic inflation factor by Eigenstrat analysis. Now I have genotyped one SNP in this sample and calculated the p value for the allelic association test. How can I calculate the corrected p value for the genomic inflation factor ?
Mohammed Ali Al Abri
I suppose that you can just divide your test statistic by the inflation factor (if the inflation factor is larger than one) then you can obtain the corrected p value
source: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3133943/
4 votes
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Amara Shaukat
Yes, divide the test statistic (p-value) by inflation factor (lamda) that will give the corrected p value.
1 votes
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