How make a Systems biology networks given that I know the state of regulation of proteins?

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Ilian Atanassov

You should try out David (https://david.ncifcrf.gov/) and select KEGG_pathways and try to find overrepresented pathways in your data. Then examine the pathways in detail and look for downstream pathways or components.

Manu Tej Sharma Arrojwala

Thanks for your answer.

I used DAVID but I would like to know how to specify whether a gene is upregulated or downregulated in gene list.