I am working on the interrelationship of molecular marker data (ISSR/AFLP) with the antioxidant traits detected by DPPH assay.I am following,http://www.sciencedirect.com/science/article/pii/S0926669012005110 this as my reference paper. But I am confused about how a high FST value helps to make conclusive statements on the relevance of the identified ISSR markers? What is the relation between them? I am stuck at this point, if you can please help me I can proceed. Any constructive suggestion is most welcome.
Dear, Dr Paromik
interesting question and interesting answer from Dr Xavier
The FST allows you to know the degree of similarity between the two populations. if you want to know what polymorphism and in association with your QTL I believe that you must calculate another parameter that is lodscore and is not the FST. For this I advise you to compare two populations closest possible phylogenetically with as phenotypic trait, a population with the QTL and one without the QTL.
greetings
Dear, Dr Ghosh
can you tell me why my answer it's not precise, thank you for clarification
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