I have a dataset of X axis =197 compounds, Y = 780 descriptors in excel?
You may want to try the fastcluster package: see https://cran.r-project.org/web/packages/fastcluster/index.html
Thank you sir, but I have already tried with that package. Since the y axis of my dataset is too high. I am unable to get the proper cluster.
What do you mean with "y axis" ?
Here is an example on a 197 * 780 matrix using base R functions
X
Thank you, sir. Now I got a better cluster when compared to my previous result. And I have tried circlized dendrogram, but I am not getting the proper dendrogram. I have the attached the result here.
Did you try the proposal I made ? It can be useful to filter the data (probably to consider with your large and perhaps noisy dataset).
data(USArrests)
str(USArrests)
head(USArrests)
## Euclidean distance on raw data (NOT recommended)
d0
Thank you, sir.
I have tried with your previous commands. And i got a better dendrogram by using the below commands.
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