I have a long list of Gene Ontology(GO) term with their referred ID and I would like to put this list in an on-line free available webpage and then receive the genes which categorize in each GO term ID.
What species are you caring about? If that is a popularly studied one, some databases may have what you want (i.e. Phytozome, TIGR). If not so, you should do GO annotation first, then get your list as you need.
I want to do a Comparative Transcriptome Study of Insect Pests i have done with GO annotation part .....and i got the related GO terms for species, but i want to retrieve the genes from these GO terms so that i will be able to compare the species on the basis of Upregulated and Downregulated genes.....
Is there any possible way to do this?
Just download the GO iterms for all genes. Then write a script to do your interested extractions!
I'm not familiar with insects, but I think what you want can be obtain here : http://www.ensembl.org/biomart/martview
Select your species as dataset, then in filter, paste your GO term in "GO Term Accession" ; in attributes select what information you want like "Associated Gene Name" (and chrom, start,stop, etc.)
Last click on "Results".
Another link you might be interessed in http://geneontology.org/page/go-enrichment-analysis, though it seems different from your experiment.
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