How could I count the number of chromosomes in a SAM file using perl?

Maria Giovanna Lupo @Maria-Giovanna-Lupo

20 May 2014 1 8K Report

How can Perl understand to count the chromosomes in a SAM file and how long is each chromosome once I opened and read the file?

Ted Pedersen

You can find numerous Perl modules at http::/search.cpan.org - one that might be relevant is : http://search.cpan.org/~lds/Bio-SamTools/

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