But, 6 kb is too long. There would be lots of short and incomplete RNA. Production of complete 6 kb RNA is quite low. A friend sythesize 3.5 kb SpCas9 mRNA by T7 kit produce lots of short RNA.
Wei Li I even managed to to in vitro transcription with of an mRNA about 10kb long, with similar kits that Junjie Shao was mentioning. Have a look here for the methods Article Efficient Generation of Human iPSCs by a Synthetic Self-Repl...
you should change the gel and the buffer for the gel and use specific products for conservation