I wanted to know how to get all the upstream 5'UTR from E. coli genome with Start Codon and Shine-Dalgarno sequence region annotated.
Which database to use for E. Coli? I am primarily interested to classify the genes with and without Shine-Dalgarno (SD) sequence. I know that 8% of the gene have start codon other then AUG in E.Coli. PLs help.