Senthilkumar Kailasam

4 Questions 25 Answers 0 Followers

Questions related from Senthilkumar Kailasam

How to get Homology model for a non-homologous protein?

I have a protein that is 14% sequence identical to a template protein. BUt i known based on low resolution structure that their structurally very similar. I want to use the high resolution PDB as...

08 November 2017 7,747 2 View

How to predict Protein-protein interaction for a specific protein surface?

I have a protein complex for which multiple sites specific mutations were carried out. A stretch on the surface of the protein shows phenotypic and biochemical changes. It has a known...

18 April 2017 7,561 6 View

How to calculate hydrodynamic radius for a PDB structure?

I have PDB files from MD simulation and would like to calculate hydrodynamic radius (RH). I tried using HYDROPRO. It provides translational diffusion coeff. and Radius of gyration. from which RH...

18 April 2017 3,908 9 View

How can one get all the upstream 5'-UTR sequence from E. coli genome with Start Codon and Shine-Dalgarno sequence region annotated?

I wanted to know how to get all the upstream 5'UTR from E. coli genome with Start Codon and Shine-Dalgarno sequence region annotated. Which database to use for E. Coli? I am primarily interested...

15 October 2014 8,865 2 View