Blood cells in SED buffer?

Hello all, I want to extract DNA from avian blood samples in SED buffer. But I would like to know if it is possible to obtain erythrocytes after the blood samples have been stored in SED. I know...

05 June 2016 1,687 0 View

Can anyone help with gene duplication and phylogenetics?

I have a dataset of approx 150 DNA sequences of a gene with 450 bp length. The dataset contains genes for related species with divergence times of about 26 mya, and gene duplication is widely...

04 May 2014 4,277 8 View

How could the selection intensity among loci be measured?

I've been genotyping genes that have been under duplication, so I want to know if there is a method to measure selection among those loci under duplication to find differences among them.

31 December 2013 4,623 5 View

Homology modelling or in silico mutation.

I want to get the structure of different proteins. But their similarity is about 95%. There are some mutations distributed in a region of the protein. Which is the best way to obtain a good model,...

06 July 2013 1,563 9 View

Does anyone know any software or servers to calculate desolvation free energy between two proteins?

I am trying to get thermodynamic measures for a protein protein docking, but I want to take as input my own generated pdb files. I have tried Fastcontact server and it works in several cases but...

01 February 2013 8,873 1 View

Does anyone know a way to obtain the labels of distances between atoms in plain text with pymol?

I am tryinng to measure different distances in different protein protein dockings i have made. I want to export the distances to plain text to make statistical analysis.

10 November 2012 2,230 1 View

error in running a model in Abaqus

Excessive rotation of nodes in node set ErrNodeExcessRotation-Step1

17 August 2021 0 0 View

error in modelling model in Abaqus

Excessive rotation of nodes in node set ErrNodeExcessRotation-Step1

17 August 2021 0 0 View

MD MOE RMSD

How to calculate the RMSD values for a MD simulation using MOE?

07 August 2021 0 0 View

MD MOE RMSD

How to calculate the RMSD values for a MD simulation using MOE?

07 August 2021 0 0 View

MGL tools

20 June 2021 0 0 View

fatal error

When I tried to energy minimization my system, I got fatal error as below. Fatal error: Atomtype opls_116 not found Although I've already added this line: ; include water #include "oplsaa.ff/spc.itp" to [molecultype] directive in my topology.

16 June 2021 0 0 View

fatal error

When I tried to energy minimization my system, I got fatal error as below. Fatal error: Atomtype opls_116 not found Although I've already added this line: ; include water #include "oplsaa.ff/spc.itp" to [molecultype] directive in my topology.

16 June 2021 0 0 View

fatal error

When I tried to energy minimization my system, I got fatal error as below. Fatal error: Atomtype opls_116 not found Although I've already added this line: ; include water #include "oplsaa.ff/spc.itp" to [molecultype] directive in my topology.

16 June 2021 0 0 View

fatal error

When I tried to energy minimization my system, I got fatal error as below. Fatal error: Atomtype opls_116 not found Although I've already added this line: ; include water #include "oplsaa.ff/spc.itp" to [molecultype] directive in my topology.

16 June 2021 0 0 View

i have some problem with chtMultiRegionSimpleFoam

--> FOAM FATAL ERROR: Maximum number of iterations exceeded From function Foam::scalar Foam::species::thermo::T(Foam::scalar, Foam::scalar, Foam::scalar, Foam::scalar (Foam::species::thermo::*)(Foam::scalar, Foam::scalar) const, Foam::scalar (Foam::species::thermo::*)(Foam::scalar, Foam::scalar) const, Foam::scalar (Foam::species::thermo::*)(Foam::scalar) const) const [with Thermo = Foam::hConstThermo >; Type = Foam::sensibleEnthalpy; Foam::scalar = double; Foam::species::thermo = Foam::species::thermo >, Foam::sensibleEnthalpy>] in file /home/ubuntu/OpenFOAM/OpenFOAM-4.1/src/thermophysicalModels/specie/lnInclude/thermoI.H at line 66. FOAM aborting #0 Foam::error::printStack(Foam::Ostream&) at ??:? #1 Foam::error::abort() at ??:? #2 Foam::heRhoThermo >, Foam::sensibleEnthalpy> > > >::calculate() at ??:? #3 Foam::heRhoThermo >, Foam::sensibleEnthalpy> > > >::correct() at ??:? #4 ? at ??:? #5 __libc_start_main in "/lib/x86_64-linux-gnu/libc.so.6" #6 ? at ??:?

24 March 2021 0 0 View