I want to perform the comparative genomics analysis of known sequences of wheat chromosome 1D and all the known sequences of Aegilops kotschyi at NCBI. Can anyone provide me the protocol,or tool or pipeline for the same.
Use The Galaxy project: http://galaxyproject.org/
MAUVE, MAKER, Circoletto, Phytozome, GreenPhyl (the later 2 are very good start points!) are extremely useful resources ! best wishes.
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