How can I perform synteny analysis of Mosquito genes?

16 April 2021 1 4K Report

Hi, I want to perform synteny analysis of mosquito genes but I am unable to do it with TBTool synteny as it does not produce a collinearity file. Please suggest me any tool or tutorial. Also how can I find gene duplication in a species. Thanks

Rafael Cuadrat

For gene duplication I would suggest OrtoMCL, so you look for paralogs. For synteny, http://darlinglab.org/mauve/mauve.html.

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