9 Questions 8 Answers 0 Followers
Questions related from Zeeshan Zafar
I need .gro, .itp, and .prm file for heteroatom for simulations of TM-proteins. Automated Topology Builder is not generating these files. Similar is the case with PRODRG? Any suggestions please.
23 April 2022 961 4 View
I want to align mRNA with the genomic sequence. I was using MGAlignit earlier but the server is not responding now. Do you know of any alternate tool?
27 March 2022 8,279 2 View
Hi. I am running transmembrane protein simulation. I am confused at position restraining. During the shrinking steps using inflategro.pl script, tutorial mentions experimental value 0.69A but i do...
19 August 2021 5,891 5 View
Hi, I want to perform synteny analysis of mosquito genes but I am unable to do it with TBTool synteny as it does not produce a collinearity file. Please suggest me any tool or tutorial. Also how...
16 April 2021 4,093 1 View
I want to do modeling of a sequence, which shows less than 20 pc similarity on swiss model, I-Tasser has not been working since 2 months. I there any alternative of I-Tasser which I can use for...
07 March 2021 9,351 0 View
I am trying to perform homology modeling using the swiss-model but I have found that the swiss-model gives the same number of residues as that of the template. Whereas my sequence has more...
22 January 2021 5,741 3 View
I want to know chemical properties such as repellent tendency.
06 January 2021 4,948 3 View
I was going to use LigPrep for ligand optimization but LigPrep is not opensource and I don't have a budget to buy. Please suggest to me any other Ligand Preparation Tool.
02 December 2020 733 4 View
For Fungal Spore suspension, can I use Tween 20 instead of Tween 80 as both are detergents?
20 November 2020 9,476 2 View
