10 Questions 9 Answers 0 Followers
Questions related from Zeeshan Zafar
I need .gro, .itp, and .prm file for heteroatom for simulations of TM-proteins. Automated Topology Builder is not generating these files. Similar is the case with PRODRG? Any suggestions please.
23 April 2022 1,020 4 View
I want to align mRNA with the genomic sequence. I was using MGAlignit earlier but the server is not responding now. Do you know of any alternate tool?
27 March 2022 8,325 2 View
Hi. I am running transmembrane protein simulation. I am confused at position restraining. During the shrinking steps using inflategro.pl script, tutorial mentions experimental value 0.69A but i do...
19 August 2021 5,952 5 View
I created image of aligning the cDNA to genome using MGAlign. But it's server is not working anymore. Can someone suggest me any such tool. I've used splign but it's image is not good.
26 May 2021 6,315 1 View
Hi, I want to perform synteny analysis of mosquito genes but I am unable to do it with TBTool synteny as it does not produce a collinearity file. Please suggest me any tool or tutorial. Also how...
16 April 2021 4,138 1 View
I want to do modeling of a sequence, which shows less than 20 pc similarity on swiss model, I-Tasser has not been working since 2 months. I there any alternative of I-Tasser which I can use for...
07 March 2021 9,416 0 View
I am trying to perform homology modeling using the swiss-model but I have found that the swiss-model gives the same number of residues as that of the template. Whereas my sequence has more...
22 January 2021 5,840 3 View
I want to know chemical properties such as repellent tendency.
06 January 2021 5,035 3 View
I was going to use LigPrep for ligand optimization but LigPrep is not opensource and I don't have a budget to buy. Please suggest to me any other Ligand Preparation Tool.
02 December 2020 787 4 View
For Fungal Spore suspension, can I use Tween 20 instead of Tween 80 as both are detergents?
20 November 2020 9,544 2 View
