Hi Carlos

Give a try to this recently published database called hTFtarget

http://bioinfo.life.hust.edu.cn/hTFtarget#!/

You can query the database using the TF or the target... It looks that this is just for humans, but it is the most recent one.

If you want something related only with mouse, you can try this one:

https://sunlab.cpy.cuhk.edu.hk/mTFkb/

Hope it helps. Best of luck

Paco

Hi carlos,

You can use transcript dataset against PLANTFDB version 5.0 online platform. It will be good resource for you to screen using the same transcript ID.

It is an old question with multiple possible answers. Mine is to use MSigDB (https://www.gsea-msigdb.org/gsea/msigdb/) with your mouse genes.

- Click on "investigate."

- register or login

- paste your "Input Gene Identifiers" as NCBI gene IDs and select "TFT: all transcription factor targets."

http://www.gsea-msigdb.org/gsea/msigdb/collections.jsp#:~:text=All%20transcription%20factor%20target%20prediction%20gene%20sets.%20Combined%20superset%20of%20both%20GTRD%20prediction%20methods%20and%20legacy%20sets.

Not sure if it works with 1400 genes, but it's worth a try.

I prefer the hESlincRNABrower- you can use it

Fyi, the tool that Elsayed E Hafez recommends seems not to work. Anyway, it is a "Browser for transcriptional profiling and transcriptional regulation in human embryonic stem cells" and Carlos Moreno is working with mouse genes...

You can run a TFBS enrichment analysis on the promoter of these genes with Homer. Basically, get the regions [-1000,0] from the TSS as a bed file and feed the tool.