11 Questions 172 Answers 0 Followers
Questions related from Francisco J. Enguita
Dear All I did a virtual drug screening with Autodock-Vina, and I have generated a list of log files (one for each ligand analyzed) and solutions in PDBQT format. Do you have some script or...
02 July 2019 7,170 16 View
Hi there I would like to know and to get your feedback about you favourite Gene-enrichment analysis software based in a graphical environment, preferably on-line. Please give me your feedback...
18 June 2018 4,792 9 View
Dear All I wanted to give a try to Nanostring system to detect extracellular miRNAs in a screening-based approach. I am wondering if some of you have experience with Nanostring in the detection...
14 June 2018 8,524 3 View
Hi there I got several contact matrices in XPM format generated by GROMACS trajectories for a series of protein mutants. How to compare them to extract the differences between atom contacts in...
19 December 2017 848 10 View
I am struggling with the IDs of circRNA microarray from Arraystar and their correspondences with general circRNA databases such as circBase. Some of you have used this service from Arraystar?. Do...
04 May 2017 3,768 13 View
Dear All I have several MD trajectories generated by NAMD using coarse-grained dynamics. I would like to perform a deep analysis of the data. Is there any specific tool for this kind of...
17 February 2016 4,578 7 View
Hi All Anyone with experience in the use of DiffCorr package within R (or some alternative) to perform differential network correlation analysis in gene expression ?. I would need some advice and...
21 April 2015 9,169 8 View
I got a triangular correlation expression matrix. I would like to know any easy to use software to extract clustering information from this matrix.
08 March 2014 380 3 View
I am looking for a relatively user-friendly pipeline for differential expression analysis of miRNAs in illumina data. I have tried miRanalyzer and iMir but I was not able to set up the software in...
18 January 2014 576 10 View
I am trying to clone a few lincRNAs to express them in cell lines. I can easily quantify them by qPCR. However when I try to amplify the full lincRNA for cloning using cDNA as template, I get no...
12 March 2013 4,834 8 View
Fractal models described the universe as a chaotic system. Biology also can be explained by using these models in some extend. However I was wondering if some among us have experience in...
12 September 2012 8,202 9 View
