Hi everyone,
I try to find a tool to draw the exon/intron plot and show the alternative splicings in my genes.
Would you please kindly let me know which site or software is useful for my job?
Thanks.
Hi Mahtab Dastpak
if it's for human or "high species", you can use the UCSC website (http://genome.ucsc.edu) with its genome browser. Optional tracks can surely be of interest.
if it's your own data with RNAseq and aligned files (.bam), you can use IGV with its optional sashimi plot tool.
fred
Article Calculation of Splicing Potential from the Alternative Splic...
Fedorov.
Mahtab Dastpak
Thank you so much.
I also want to show a schematic picture of alternative splicings in my genes.
Are there any specific softwares to draw the pictures?
Thanks
in UCSC you can get as a vectorial pdf the picture you see in the genome browser as it is in the attach file.
fred
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