Yeah, annotation is always a problem. You get PR proteins, heat shock proteins, proteins involved in defensive response, but there are also so much proteins unidentified because the annotation is zero. There are alignment with existing data, but existing data does not indicate any functionality or cellular process involved, so that hardly helps.
Thank you for your suggestion. Yep, I can query my interesting gene by Accession ID and get locus ID but it will take a long time to do.
I wanna find any website has the tools for searching which follows family protein such as GreenPhyl (but Greenphyl gave me the results in a mess, I was confused).
in your data, there are a few acidic and a few JA and SA and pathogen responsive ones detected. So focus on them. They should be related to biotic stress and plant secondary metabolism and signalling pathways to swich on defensive mechanism. So dig on those ones more and see what you can get.
Some database with gene info might have locus id, you have to go to the most popular genome database to check. They may have it, but i am entirely sure coz i don't use locus id, i do more about protein id and gene id. So sorry i can't be much of a help in that sense.