Hi Peter

Try GoToolbox. This server has a database for E.coli GO-term analysis

http://genome.crg.es/GOToolBox/

Good luck. Best

Paco

Hi Peter,

You could also try with DAVID Bioinformatics Resources

http://david.abcc.ncifcrf.gov/home.jsp

This tool can do GO Term enrichment analysis with different sets of GOs (GO Slim, Go Fat, etc..) and has information for E. coli. Just select "Functional Annotation" and paste your list of genes. Afterwards, under "select Identifier" pick the option "Official_gene_symbol". You can also add a background list if you want to compare the enrichment against an specific set of genes.

Regards

Atahualpa

Number of tools are available for go enrichment analysis. But it also depend what technology you are using. For example you can not use GSEA method[which specifically design for microarray experiments] in RNASeq analysis.