How can I conduct GWAS?

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Agusto Luzuriaga-Neira

You can do the analysis in Plink https://www.cog-genomics.org/plink/2.0/. I guess it is the easiest way, there are other software that also can perform GWAS

Hassan Khanzadeh

Hi, The first step is quality control (QC) in plink. Then there are two popular method for GWAS: Fixed linear regression model in plink, and linear mixed model in softwares such as GCTA , GEMMA and ....

A. M. Sajedur Rahman

I used TASSEL in my thesis.

https://edepot.wur.nl/474618

Title: Genetic Analysis of Leaf and Sprout Traits of Cabbage and Brussels Sprout

(https://edepot.wur.nl/474618)

Page Number: 41

Here you would get the step by step procedure to conduct GWAS.