How can I compare two mRNA sequences?

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Michael J. Benedik

You can use Blast (BlastN) to align two sequences. Click on the box "align two or more sequences" so it doesn't align it to the entire database.

Jonathan Jagodnik

You can use Clustal Omega ( https://www.ebi.ac.uk/Tools/msa/clustalo/ ), it usually does a decent job

Muazzam Sheriff Maqbul

Article A comparison of mRNA sequencing (RNA-Seq) library preparatio...