Hi there, I need a synteny of a ~10kb regions of several related species that have non-annotated genomes. Does anyone know a program to do that?

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Thomas D. Otto

Hi,

act allows you to visualize as many clusters as you want, or that your monitor supports.

When you include the fasta and comparison files, there is a box to include more sequences.

best,

Thomas

Adam James Bewick

Hey there,

This might help. You can use CoGe to create synteny maps to aid in identifying collinearity between genomes. You can create an account and upload your genomes privately. Since you are working with bacteria the this should be pretty painless.

Adam