I'm currently trying to visualize a mitochondrial protein of Saccharomyces cerevisiae (with triple HA tag) using indirect immunefluorescence.

This is my current protocol: http://mcb.berkeley.edu/labs/koshland/Protocols/MICROSCOPY/IF%20II.html

I'm able to get a somewhat decent mitochondrial staining when I fix the cells for less than 20 min. However, the spheroplasts are super sensitive and tend to break down during the later wash and incubation steps. They also don't seem to adhere well to the poly-lysine coating in comparision with cell that were fixed for 1 h.

Longer fixation times also stabilize the spheroplasts but seems to interfere with antigen recognition.

I would be grateful for any tips or protocols.

Cheers

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