I'm doing transmigration assays in which I coat the transwells with HUVEC cells, add different chemokines to the lower chamber and the cells from mouse peritoneum (PEC) on top of HUVEC, and let them migrate through HUVEC toward chemokines. I expected the PEC to migrate more through HUVEC when there is a specific chemokine in the lower chamber compared to the wells where there is no chemokine. I did this experiment three times and for a specific chemokine, SDF-1alpha, less migration could be seen compared to the background.

Does anybody have any idea what would be the reason? I'm somehow sure that there is no problem with HUVEC, because PEC could migrate toward MCP-1 well.

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