I am working with antibody microarrays printed on epoxy glass. The slides are incubated with serum followed by a secondary antibody conjugated with a fluorescent dye. 10-15% of the time we are seeing a global decrease in fluorescent signal across an entire reaction well. We cannot determine the source of this signal inhibition.
Our serum is diluted (1:80) in 200mM NaPO4, 10% glycerol, 5% BSA, and 0.01% Tween-20 at pH 7.4. Our secondary antibody is diluted (1:2000) in 5% BSA, 1X PBS, and 0.05% Tween-20.
Could the glycerol or sodium phosphate be the root of these signal inhibitions? The signal inhibition only occurs in the presence of serum.