Hi,

I am working on a gene where I recently found Insertion of CACA in 5'UTR of one of the Rice genes I am working on, with strong phenotypic differences.

Here's the sequence -

'5CTGCACACACACACACACACACTCACACTCACACACGCTCTCAACTCACTCCCGCTCAACACAGCGCTCACTTCTCATCTCCAATCTC 3'

I checked the miRNA binding sites and secondary structure but did not find any differences compared to the reference sequence....

'5CTGCACACACACACACACTCACACTCACACACGCTCTCAACTCACTCCCGCTCAACACAGCGCTCACTTCTCATCTCCAATCTC 3'

I would like to know if CA repeats could affect the gene expression or translation process? or anything particular predictions I could look into?

I am open for any suggestions and discussions. Can provide more information if needed.

thanks

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