Perhaps, using a public protein database from the original species (mouse?) would work. Uniprot and NCBI let you download it as fasta file. Otherwise, if cell line transcriptome is known, it can be translated into proteins sequence database and exported in required format. Best regards.
A lot of RNA Seq experiments done mostly at Caltech university labs- are logged in ENCODE database - with all possible information one can get from these experiments. Links for them is here: