We are trying to enumerate Bacillus spores by FCM. Known count of spore suspension is activated at 70 deg for 10 min followed by 45 deg cooling before staining. Counting by microbiological plate counting gives us 100% viability We used the dye TOTO 1 to stain dead cells. but found all the cells positive . we are using Canto II. Any suggestions on how to adjust the settings for bacterial enumeration using FCM?

In the attached paper, TOTO1 and CDFA have been used together. How do we dicriminate between these two dyes using CantoII?

Thanks

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