I need to insert a new set of sgRNA sequences in CRISPR/Cas9 Lentivector,.
I'll do this by designing primers to replace the existing 20bp sgRNA sequence with the one of interest.
I'll design the primers with http://nebasechanger.neb.com/ based on the vector sequences, CRISPR sequences that I have already.
So far so good...
My questions:
Once I've amplified successfully (which I plan to do using a Phusion enzyme master mix!?! is this ok?) some protocols suggest I need to ligate with T4, some suggest I need to digest with DpnI, some suggest I need to do both.
Do i need to ligate?
Do I need to digest?
Do I need to both?
...before I transform my bacteria.
Thanks