I have a concatenated file (fasta, nexus, or phylip) of ~550 loci. I need to convert this to a GENEPOP file format with different populations noted within it.

Is there an easy way to accomplish this task? I have tried to convert each of the files over using PGDSpider, but have not been successful. Ideally it would also be nice to be able to easily convert it via command line or R to fit into a pipeline seamlessly.

Thanks for any suggestions!

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