I have an issue. I need to measure cell viability of my HeLa (mammalian) cells that are in co-culture with bacterial cells (Prevotella, Lactobacillus). If used common MTT assay methods with a 96 well plate reader wouldn't the bacterial cells be able to generate the foramazan using non-mitochondrial methods?

Does anyone know of a dye that is specific to eukaryotic cells? 

Also would flow cytometry be able to differentiate or sort the two cell types?

References to literature or webpages would be great. Thank you!

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