You can try PCA by using a free software Biodiversity Pro. (BD Pro.)

http://folk.uio.no/ohammer/past/

I am so thankful to Singh and Scanu for providing a suggestion definitely  it help me. Dear Singh Sir i will try to download but unable to download so if you have any link so please provide me to download.

Dr A N Singh, you can download XLSTAT 2012 trial version for 30 days, or you can also use XLSTAT 2006 free version. PCA is a type of multivariate analysis. PCA can be easily done by this software. Download it from www.xlstat.com. You can analyse data with in one minute by using it. 

Search it on google. all the best.

Dr A N Singh, you can download XLSTAT 2012 trial version for 30 days, or you can also use XLSTAT 2006 free version. PCA is a type of multivariate analysis. PCA can be easily done by this software. Download it from www.xlstat.com. You can analyse data with in one minute by using it. 

Search it on google. all the best.

Dear Mr Singh, you can go for several MS-Exel Add In free software tool to perform PCA like Unistats and others. 

Thank Rachit..for suggestion definitely it help me.

Dear you can use SPSS

 You can also use PC Ord software which is more user friendly.

Thank K.D. and S. Singh for suggestion definitely it help me.

I use SPSS and MINITAB

The R free software is really appropriate. You need to install the following packages : Rcmdr and factominer. This will make PCA implementation easier.

I also think that R is a very good choice!

Cheers

for me:

1. choice R

2. - SciLab

in R, it's only one command: pca

in MATLAB, it's one command: svd

R would be perfect for you. There are also tonnes of examples for different applications online.

I am so thankful to all for providing a good suggestion definitely it help me.

I am so thankful to Thiago for providing a good suggestion definitely it help me. 

U can use R software, it is easy to handle

R software is so much helpful for principal component Analysis

R studio and SPSS is very useful for this

can someone help me how to use R software otherwise XLSTAT also a good one

http://www.metaboanalyst.ca/

XLSTAT, R, SPSS, MATLAB, UNSCRAMBLER and MULTIBASE are softwares that can do PCA for you

but for getting free software, my suggestion is SPSS.

Dear Nisha Thakur

Please find the following link to learn R

https://www.datacamp.com/?utm_source=fb_paid&utm_medium=fb_desktop&utm_campaign=statmethods_visitors

Regards

Dear Nisha

maybe you have to try using unscrambler program for PCA. it is very easy to work with. also you can do LDA, PLS, SVM and other analysis that are useful for data processing.

With the restriction of free, I would go with R. If you need point-and-click statistics, then something like PAST would work. I have not used PAST enough to really know its limitations.

hello, recently, I found this: http://biit.cs.ut.ee/clustvis/ Seems very easy stuff to play with at the very beginning.

Dear friends, You guys could use BioVinci for PCA. It is a FREE and powerful web application that produces high quality scientific figures in seconds.

To do the PCA in BioVinci:

The results comprise of the scatter plot of PC1 and PC2, the bar char of Proportion of variances, and data of all PCs.You could try the PCA example here:

https://vinci.bioturing.com/panel/workset/build/principal-component-analysis

P/S: for high dimension data, the Desktop version of BioVinci is the suitable choice. You could download it here http://vinci.bioturing.com/download-app

If you've limited interest and skills in programming, try OriginLab or MiniTab Software. Both have user friendly interface and you can find loads of video tutorials. Best wishes.

I used XLSTAT for PCA.

BioVinci, R, MATLAB are softwares that can do PCA.

But I think, BioVinci is a good choice because it is very simple to use.

I used Minitab and it's easy to work with. The following links are similar to your question and can be useful to you.

https://www.researchgate.net/post/Which_software_is_suitable_to_do_PCA_analysis

https://www.researchgate.net/post/What_are_the_good_software_for_doing_Principal_Component_Analysis

The web-tools like ClustVis and OriginLab software are quite helpful and easy-to-use for the novice in data processing and analyzing. One could upload the raw data and make the PCA plots.

You can conduct it with R, it is free.

You can run it by using PRIMER and Past

Article Principal component analysis - a tutorial

For a professional PCA or PLS analysis, I recommended SIMCA-P.

IglooPlot link : https://web.rniapps.net/webigloo/

If you are using PCA also try out this free tool called IglooPlot. It works with the same data input as used for PCA but in many cases allows to get improved insights. The web implementation is extremely interactive to play around and query your data visually as well as perform visual ANOVA on the same. A standalone version of the tool is alo available but the web version is more feature rich.

Web-Igloo visualizes multivariate data in a 2D chart of multiple quantitative variables represented as anchors on a semicircle. The tool not only identifies clusters in your data but also allows to infer the features responsible for formation of the clusters. Projected data points can be easily mapped to class label information using a simple metadata file. View from among a list of examples or upload your own data into our server to generate a customized layout. Web-Igloo plots your multi-dimensional data keeping all the features intact without any feature decomposition.

Highlighted features include

• User selectable methods for positioning anchors and selecting normalization options
• Options to filter out non informative features
• BoxPlot summaries of anchor (or feature) distribution
• Interactively visualize sample and feature contributions using bar and bubble plots
• Easy mapping of multilevel class label information using a simple metadata file
• Convex hull prediction for class boundaries with automated coloring
• Simple and flexible search function to simultaneously visualize search outputs in plot as well as metadata table
• Interactively identify differentially abundant features across multiple classes using ANOVA
• Custom color selection for class labels

IglooPlot link : https://web.rniapps.net/webigloo/

Publication links :

• Kuntal BK and Mande SS. Web-Igloo: a web based platform for multivariate data visualization.Bioinformatics. 2017 Feb 15;33(4):615-617.
• Kuntal BK, Ghosh TS, Mande SS. Igloo-Plot: a tool for visualization of multidimensional datasets. Genomics. 2014 Jan;103(1):11-20.

Minitab is good software for this purpose

Hi Sir

Try XLSTAT its very good simple to use. 1 month free subscription there. Moreover youtube has XLSTAT DEMO videos, it will help you a lot to use the software

Dear Dr A.N. Singh you can use SPSS or R softwares, they can help you a lot for PCA.

R is a free statistical software that is as powerful, if not more, as its major commercial analogs.

https://www.r-project.org/

R for programmers and BioVinci for non-programmers (they use R for the code underneath so the results are pretty similar).

https://www.youtube.com/watch?v=6truZBwKEm8

http://utopia.duth.gr/~glykos/Carma.html

https://groups.google.com/forum/#!forum/carma-molecular-dynamics

you can try SPSS.

I made a small free web utility to perform online PCA available here :

https://web.rniapps.net/webigloo/pca/

The data can be uploaded as a tab delimited file along with it's associated metadata (refer to the sample files in the webpage) and visually explore the output.

PCA is quite easy in R.

For doing PCA please see the details in the article Article Size does matter: Parallel evolution of adaptive thermal tol...

and

supplementary material

https://onlinelibrary.wiley.com/action/downloadSupplement?doi=10.1002%2Fece3.4550&file=ece34550-sup-0001-AppendixS1.docx

I have a data from the NGS and I want to do PCOA by using these data. I am having problem in MacQUIIME. If, anyone know any useful information about m query, please let me know. Thank you in advance.

Dear Dr. A. N. Singh

Here https://github.com/gmrandazzo/QStudioMetrics/releases you can find my own software. It is opensource! You do not need to write any line of code to make your multivariate analysis. It works on Linux, OSX and Windows 64 bit.

Best regards

Dear Kuntal Kumar Bhusan,

I tried the https://web.rniapps.net/webigloo/pca/ tool but it was just producing an error. Can you please tell my how many data can be uploaded and how the meta and sample value data have to look?

Try with TANAGRA. It´s e free app. for EXCEL

I think you can try EXCEL STAT, R commander, QUIIME

UNISTAT Version 10

You may try the XSTATE, QUIIME, R etc....depending on your data set

Dear Prof Singh

there are many software which are very good viz., GGE Biplot for Yan, AMMISOFT FOR Gauch, GEA-R and GENSTAT.

WARMS

I have done PCA using XLSTAT, you can get 30-day free trial and it is very easy to use, it attached to the Excel software.

I used also xlstat. Good and easy to use.

I once used a free public domain program..."ClutVis"....... visit

https://biit.cs.ut.ee/clustvis/

R Core Team (2019). R: A language and environment for statistical computing.

R Foundation for Statistical Computing, Vienna, Austria. URL https://www.R-project.org/.

If you have basic knowledge of Python, work with large data (>10K samples >10K features each) and want to use PCA to reduce the data size, then you may like to try function pca from raleigh package.

pip install --user raleigh

python

>>> from raleigh.interfaces.pca import pca

>>> help(pca) # explains the usage, gives simple usage examples

https://qlucore.com/principal-component-analysis-0?gclid=CjwKCAiA1rPyBRAREiwA1UIy8DEuj6Wv0LQdbJM60tY_VxfENuXDeR1aTPtemhYj-9twZUHwGxoL5RoC2aYQAvD_BwE

TANAGRA, application in EXCEL

Anybody have XLSTAT free version?? Please, share it with me. E-mail: [email protected]

Xlstat works good in creating PCA plots using bootstrap methods

R, XLSTAT and Past

XLSTAT is easy

Jamovi or R

Try in Python as described here https://www.reneshbedre.com/blog/principal-component-analysis.html

R or Biovinci would do a great job for you

https://vinci.bioturing.com/feature

Xlstat. ..performs good

Please can anyone help with either Xlstat, principal component analysis free version, or extend his or key product key.

SPSS software is good and easy to use for PCA

Hello Dear, I will advise XLSTAT

For bulk RNA-seq data, seqmonk is an excellent program.

For single-cell RNA-seq, it may be a bit trickier but does get the job done

XL STAT is successful software for PCA graphs

i am using Past4.03 free software

XLstat

R software is free.........XLstat is paid software

R or Seurat

Dear Dr. A. N. Singh

Try to use a programme Xlstat that is very easy and successful

Hi,

How can we apply PCA in free version of XLStat??

Genstat is good software for PCA, Past4.03 is good for PCA figures.

Try clustvis at https://biit.cs.ut.ee/clustvis/

It is good, but graphs produced are not be editable as XLstat, to align lables in good manner

If you want to analyze metabolomics data by multivariate analyses, such as PCA or PLS-DA, I definitely suggest MetaboAnalyst 5.0 (https://www.metaboanalyst.ca/). It is a free and user-friendly online software. On this website, you can also find an R package named "MetaboAnalystR", in case you want to perform these analyses in R software.

R software is a good software for PCA.

Statgraphics is the best

Try PAST. It is free and easy to use.