I am looking to construct an infectious clone of a plant virus for my MSc. Project. the virus I am working with has ssRNA +ve sense genome with a poly A tail and the genome size is ~7.5KB in length. Can someone recommend a vector for me to use?
I've used pCB302-3 since it is much smaller than other binary vectors with some success.
I'm running virtual screening tests with AutoDock GPU and am trying to validate that my configuration (parameter file, search box settings based on the target, search parameters, etc.) is correct,...
26 June 2024 6,944 1 View
Tree growth is an important aspect of forestry and forest ecology. Typically a growth rate is calculated as the difference between two stem diameter measurements over a given time interval: (dbh2...
15 May 2024 8,739 2 View
I am trying to use Maestro software (Schrodinger) and I get the error: Cannot start job with dummy GPU host set. Please set valid CPU or GPU host. I have found that you have to change the...
10 March 2024 1,222 1 View
Is there a formula for back calculating the expected melting point of beef fat from the fatty acid profile? I am aware there is a strong correlation between predicting Oleic Acid from the melting...
20 February 2024 8,141 0 View
I am considering running an MD simulation of a protein with varying ligand concentrations. I think replica exchange molecular dynamics should be able to do that, but I have no idea how that is...
07 February 2024 375 3 View
Some context: I'm trying to generate a clone possessing a gram positive phage endolysin gene in E. coli DH5alpha. I'm using the pet28 vector and initially tried to clone/transform directly into...
04 February 2024 7,155 3 View
I want to design and simulate a high gain, wideband rectangular patch antenna.
23 January 2024 3,712 1 View
I am working on a series of lock and dam structures, where as a mitigation tool, managers release water from an upstream reservoir to supplement the natural flows in order to submerge the dam for...
10 January 2024 8,041 1 View
Hello! I want to measure the osmotic pressure/osmolarity of some tissue culture media. I have a freezing point osmometer which I use for liquid media, however I don't know if this will be...
09 January 2024 3,910 1 View
Trying to develop a sampling procedure for grain in soybean lines/varieties. Later to be tested for pesticide accumulation.
23 November 2023 4,202 0 View
I have virus (viral hemorrhagic septicemia virus) in suspension and the experiment will not involve cells. What level of TCID50 is preferred?
11 August 2024 3,115 1 View
Hello, I am currently having problems with RNA extraction. I am using mouse liver (C57BL6J), and I have extracted RNA from mouse liver before. Before this experiment, my final RNA pellets were...
11 August 2024 7,082 3 View
I have been doing the m6A dot blot for a while with no improvement, I am extracting the RNA, and I can see the dots although the three biological replicas give a different reading on the memberan...
10 August 2024 8,539 5 View
I've been performing RNA extraction on cotton petiole tissue for a few months now using the method described in the following paper, a derivative of the typical hot borate method...
08 August 2024 9,882 2 View
I'm trying to find a DNA extraction method for fungi that does not require equipment and heating. Is there anyone who can suggest an alternative option? Thank you
08 August 2024 4,733 2 View
I am currently working on LncRNA; to know the lncRNA-protein interactions I want to do RNA pull down assay, so I need to design primers with T7 promoter. I need assistance in this regard.
07 August 2024 6,622 1 View
Recently, we observed that 99% of the sequences in our RNA-seq data corresponded to the E. coli genome. Despite multiple DNAse treatments after RNA extraction and ribosomal depletion, we were...
06 August 2024 807 3 View
How do soil microflora interact with plant roots and influence plant nutrition, health, and productivity?
06 August 2024 9,618 3 View
I am planning to collect human fecal samples for metatranscriptomic analysis using MGI. These samples are from indigenous people living in a region with high temperatures. I will have access to a...
06 August 2024 1,367 3 View
I will be with my students collecting seaweed samples in a marine farm and later we will process this tissue for RNA isolation and further sequencing. Does anyone have tips on how to collect the...
04 August 2024 501 2 View