I will clone my miRNA targeted 3'UTRs into a lusiferase reporter vector ( miR-glo lusiferase reporter) Unfortunatelly, I dont have primers to check cloning via PCR. Due to the fact that , I synthesized my cloning frangment as double strand DNA (81 Bp). So I dont have any primer to check plasmid insertion via PCR.
Can I seperate mock vector and inserted vector via Agarose or PAGE? (Probably PAGE).
I will digest my Vector SacI and XhoI actually they have no possiblity to make overhangs to be ligated without insertion. But to eliminate risks and saving time before sequencing. Is it possible to check this insertion via electropharesis?
If the double digested vector closed on itself it will be 7345 bp
And the inserted vector will be 7430 bp
Non cutted vector will be 7350 but not really possible because I will recover vector via gel purification.
If requried I can use a ~30cm PAGE gel or normal western blot gel system.
Double Strand Oligo That will be inserted : Bold sequences refers for digested sticky pairs.
5’CGGTGATTGGAATGCCAAACACTCTTAAGTTTATTTTCTTTTTTCGTTTTATAAATTCAGTGTGCCAAATGAAACTTTTTC 3’
5’TCGAGAAAAAGTTTCATTTGGCACACTGAATTTATAAAACGAAAAAAGAAAATAAACTTAAGAGTGTTTGGCATTCCAATCACCGAGCT 3’
Sac I XhoI
GAGCT^C C^TCGAG
C^TCGAG GAGCT^C
Thanks for answers.