I'm looking for FASTA files of whole genomes (any species) in which EXON-sequences are written in UPPER case and intron-sequences in lower case, like here: http://bpg.utoledo.edu/~afedorov/lab/eid.html just with more species and newer assemblies (i.e. human 38, etc). ;)
Thank you for your answer!
I was looking into conversing the files myself, but my programming experience is too low. I'm sure there is a way to use the NCBI C++ Toolkit to grab the sequences and the positions of all exons from the Blast servers and write a program that automatically converts all exonic bases to upper case letters and saves the output as a FASTA file.
But for that, I need to learn a looooot of programming first, so I wanted to check if something like this already exists somewhere.
- Badges
- Science topic
- Similar topics
- Biological Science
- Molecular Cell Biology
- Culture Cells
- Cell Line