I want the correlation based filter algorithm to reduce dimension of gene expression data.
You mean a filter based on the gene-gene correlations? I think the package WGCNA might contain a function to do so.
Otherwise, you can threshold the gene-gene correlation matrix and keep the giant component only:
require(igraph) #for graph handling
require(WGCNA) #for faster "cor" function
# set cutoff for the gene-gene correlations
thr
thank you sir @Marc Santolini, here i am attaching the code .CFS is a fuction which
returns subset of feature which maximizes CFS value by taking k no of feature using Pearson's correlation coefficient.
Dear
Look the link. May be useful.
http://machinelearningmastery.com/an-introduction-to-feature-selection/
http://www.academia.edu/7871299/A_modified_Kolmogorov-Smirnov_Correlation_Based_Filter_algorithm_for_Feature_Selection
Regards, Shafagat
What could be the reason behind a negative peak mostly arising during the initial stage of sample run (RT 1-10).
15 February 2021 4,231 4 View
What protocol should I follow to determine optimum separation conditions using an analytical column in an HPLC system?
03 February 2021 7,288 3 View
what all standards are needed to quantify and analyze the composition with a proper method fie for the mobile phase to run the sample ?
31 January 2021 7,704 4 View
How to extract a single-stranded DNA from a double-stranded DNA sample isolated from stem borer(rice affecting insect)? As I need to amplify ss Dna using a COX-1 marker having primer sequence as...
22 January 2021 3,424 3 View
Injected an oil having a concentration of 832mg/ml and found a flat top peak and was not able to quantify. How to resolve this problem?
20 January 2021 8,461 3 View
I'm trying to study the effects of desiccation on some proteins, could someone tell what solvent or what simulation conditions I should set up to simulate a desiccation environment on GROMACS.
05 January 2021 7,033 3 View
i am performing SPR experiment and i am referring some journal and websites they stated regarding coupling buffer and immobilization buffer so ihave confusion about these buffer.
06 December 2020 470 3 View
With the great interest in Virology in the world due to the COVID-19 pandemic and its related vaccine development is doing a Phd in Virology from a good institute in UK the right thing to do?
26 November 2020 3,681 3 View
I am working on the Environmental and Social indicators. So the easiest way is to get the solution is to go for any LCA tool;But my doubt is ,is it possible to mathematically model the Emissions...
17 November 2020 8,492 3 View
Residue 6 named GLU of a molecule in the input file was mapped to an entry in the topology database, but the atom CG used in that entry is not found in the input file. Perhaps your atom and/or...
16 November 2020 1,110 3 View
Hiiiii everyone! I have an enquiry on statistical analysis. I was looking for many forum and it's still cannot solve my problem. I want to compare means of two groups of data but only with two...
03 March 2021 8,796 3 View
I am on the lookout for the Enhanced Yellow Fluorescent Protein (Aequorea victoria) DNA sequence. Does anyone know where I can find it? Thank you in advance
03 March 2021 3,568 1 View
Hi, I want to start testing pitfall trap to obtain ants samples, but I need to conduct molecular analysis on those insects. So, what kind of fluid can I use? Ethanol expires too early and I need...
03 March 2021 5,978 5 View
What's the best way to measure growth rates in House sparrow chicks from day 2 to day 10? Since, the growth curve from day 2 to 10 won't be like the "Logistic curve" it might not follow logistic...
03 March 2021 1,401 3 View
I have conducted and published a systematic review and meta-analysis research with the topic related to public health and health pomotion (protocol was registed in PROSPERO). Now we want to...
03 March 2021 8,920 3 View
dear community, my model is based feature extraction from non stationary signals using discrete Wavelet Transform and then using statistical features then machine learning classifiers in order to...
03 March 2021 6,994 5 View
I just wanted to check if I need to run a linear regression separately if I am using PROCESS MACRO to run mediation analysis. Thank you.
02 March 2021 4,359 3 View
If the detection range is in ng/ml but the reference range is in ug/ml for a molecule or protein in serum or plasma .how to dilute and what is the initial volume to be taken for quantitative analysis
02 March 2021 7,670 3 View
Is There Any Feasible Method To Test The Efficiency Of Fluorescent Compounds Other Than UV Spectrometers ? Suggestions Would Be Appreciated !
02 March 2021 5,785 3 View
I am wanting to calculate the average trend in maximum annual NDVI in Iceland from 2010-2020 using MODIS MYD13Q1 V6. How would I do this? I have currently inserted the NDVI bands from the MODIS...
02 March 2021 752 2 View