I want the correlation based filter algorithm to reduce dimension of gene expression data.
You mean a filter based on the gene-gene correlations? I think the package WGCNA might contain a function to do so.
Otherwise, you can threshold the gene-gene correlation matrix and keep the giant component only:
require(igraph) #for graph handling
require(WGCNA) #for faster "cor" function
# set cutoff for the gene-gene correlations
thr
thank you sir @Marc Santolini, here i am attaching the code .CFS is a fuction which
returns subset of feature which maximizes CFS value by taking k no of feature using Pearson's correlation coefficient.
Dear
Look the link. May be useful.
http://machinelearningmastery.com/an-introduction-to-feature-selection/
http://www.academia.edu/7871299/A_modified_Kolmogorov-Smirnov_Correlation_Based_Filter_algorithm_for_Feature_Selection
Regards, Shafagat
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