Can anyone help with batch predict membrane-related genes?

More Bernardo Bello Ortí's questions See All

Which tools are there to find non-coding RNAs in bacterial RNA-seq data?

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Is it possible to have a 200 fold change miRNA?

We found a 200 fold change regulation (with good read coverages). Has anyone observed this?

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How can you find the ancestors of a bacterial species?

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What is the difference between txid738 [Organism:noexp] and txid73 8[Organism:exp] filters?

What's the difference between these two filtering alternatives when looking for all proteins available for a selected organism in NCBI? I get the double of proteins in 'noexp' case!

01 February 2014 921 2 View

Locate amino acids in 3D protein structure?

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How can I identify pseudogenes in prokaryotic genomes?

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No title

Hi, I would like to know the cDNA quantity you recommend for the mentioned PCR. It will be used to validate RNA-Seq results. Thanks, Bernardo

31 December 2013 8,033 9 View

What do you think about this correlation between qPCR and RNA-seq?

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Can anybody provide me with a list of all reported bacteria, including their corresponding phylum, class, order, and family?

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POlymer+DMSO solution and moisture??

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What is the difference between genotype and haplotype data in the ped format?

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What is the exact mechanism of the antimicrobial effect of local anesthetics?

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Patricio Manque

HI Bernardo,

what you need to do is see whether your genes have signal peptide, GPI anchor signal and transmembrane domains. All can be done using tools at expasy.org

cheers

Bernardo Bello Ortí

Finally I used Phobius tool via InterProScan with Blast2GO. Now I have a new question regarding Phobius threshold:

https://www.researchgate.net/post/How_to_interpret_PHOBIUS_results_from_Blast2GO