So I have problem when inserting the ligand into protein crystal system in discovery studio software after docking. Does any one know solution about this problem the problem is highlighted as "Failed to export: The molecules to export do not belong to the same crystal system.This is not supported by the PDB file format".
if you docked your ligand (in case of autodock ) then open dlg file (ex- protein name.dlg) and cheek the suitable run then open bdbqt file (ax- protein name runs.pdbqt) and copy that run information from root to ter and past it in pdb file of protein (ex- protein.pdb) then save it as RTF. you can visualize it by UCSF Chimera and write pdb by using same.......or send me the file or your protein and ligand ID i will try to dock it and analyse it.
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