I have to amplify HVR1 of AMA1 in Plasmodium falciparum isolates...Annealing temperature given in articles is 55 o C and i am also following all the conditions but still i didn't get positive results...
I would recheck the infos given in the paper a bit. Did you use the same Mastermix? A Gradient PCR would be a good point to start. You could also post the PCR conditions from the publication with setup as basis for recommendations