Can any one suggest the modelling, docking softwares other than Modeller anfd autodock?

siva Mallika Donepudi @Siva-Mallika-Donepudi

28 August 2012 0 816 Report

i have alrady tried modeller 9.10 for modelling, but model generated from Modeller had large threads but ramchandran plot gives 97% allowed regions. can it be used for docking studies or not?

Badges
Science topic

Similar topics
Bioinformatics
Bioinformatics and Computational Biology

More siva Mallika Donepudi's questions See All

I am getting a result that total quantum states for any particle is around 900 only. But as per quantum mechanics they may be infinite. Any comment ?

All the elementary particles are quantum states of photon and photon will have all these 900 quantum states in this nature. If I am right , what is your comment on it? If anybody feel that this...

11 April 2024 7,365 3 View

Is there any relation between a particles rotation(rotation on its own axis)and its quantum spin ?

If a point on its surface(if we suppose it as a sphere with radius 'r')moves with linear velocity 'v'(relativistic speed) and the mass pf that particle is 'm'. How can we calculate its quantum...

11 March 2024 9,837 9 View

How do we characterize the short-, medium-, and long-range-order quantitatively in atomic distances?

Does short-range order (SRO) reflect the one-bond distances, i.e., 1-2 Å? How do we demarcate the medium- and long-range order?

28 November 2023 7,614 1 View

Im not able to see any protein bands.This is how our Nylon membrane looks after taking out it from semidryer.whats the problem?

we are applying 24v for 40mins.After that our nc mebrane is becoming like the image i posted, we tried to change current and timing, every time it is becoming like this.

29 October 2023 9,589 0 View

Why separation of toluene and benzene occurs at 3 bar pressure in a distillation column?

I was asked to design a benzene production plant via a thermal toluene hydrodealkylation process, and one of the parts was to separate the benzene and toluene via distillation. I am unsure why the...

27 October 2023 9,095 1 View

Dear Professors and Researchers. Does anyone know how to install and work in Vienna Ab initio Simulation Package (VASP)?

22 October 2023 428 2 View

How to determine the volume of buffer for peptide purification using D-tube dialyzer?

How to determine the volume of buffer for unconjugated peptide removal from nanocomposite using a D-tube dialyzer, also How to test check whether the free peptide can be removed by this process or...

02 October 2023 8,153 2 View

Is it ADHD self Diagnosable, by the person who feels he/her under going with the ADHD symptoms?

I want to Know is it ADHD is self Diagnosable by the persons who undergoing with the symptoms of ADHD.

15 July 2023 7,290 5 View

We are facing the problem with agarose gel electrophoresis.after completing running the gel half of the agarose is not stained?

Even though we are mixing the ethidium bromide properly before agarose gel casting We are facing this problem of uneven staining.Its not that the staining is random, but exactly half.We tried...

11 May 2023 409 3 View

What type crucible can be used for calcination of talc powder?

There are different types of crucible material is available for calcination. What are the different crucibles that can be used for talc?

20 March 2023 5,314 2 View

Which Scopus Journal provides the most affordable fees?

"PUBLISHING IN A SCOPUS JOURNAL" Researchers are now at a cross road. The critical need to publish in a Scopus or ISI, etc journal is ever vital. Journal Publication fees must be submitted....

10 August 2024 8,621 1 View

Seeking Advice on Viability and Execution of Undergraduate Thesis Topic?

Hello everyone, I am currently developing a thesis proposal and would appreciate your input on its viability and how to effectively carry it out. My proposed topic is: "Does the perceived threat...

10 August 2024 8,992 0 View

Who will be moral responsible for the death of thousands of people in the event of an earthquake?

Who will bear moral responsibility for the deaths of thousands of people in the event of an earthquake? Weeks and months remain before the onset of strong earthquakes that bring death to...

08 August 2024 6,134 12 View

Are there any instruments for studying time similar to the way it is in space?

There are a huge number of methods for studying objects in space, according to the senses (and not only). Mechanical, thermal, optical, acoustic, electrical, magnetic, based on particle beams,...

06 August 2024 7,102 0 View

Weak DAPI staining after immunohistochemistry - how to improve?

After immunohistochemistry of previously fixed in PFA and EtOH and then frozen 20 μm sections of zebrafish brain, DAPI staining is very weak (right) compared to the same sections stained without...

05 August 2024 9,637 2 View

Why did the authors extrapolate a phenotype that they experimentally proved in one bacterial strain across the whole genus of the organism?

I aim to be as skeptical as possible regarding whether a pair of orthologous genes results in the same phenotype in their different but related bacterial organisms under similar environmental...

05 August 2024 6,787 4 View

The Curse of Evolution and Complexity?

Brain and body mass together are positively correlated with lifespan (Hofman 1993). The duration of neural development is one of the best predictors of brain size, and conception is the best...

05 August 2024 6,247 3 View

In the case of a wound l recurrence after radical breast cancer and sentinel lymph node biopsy. Are the sentinel lymph node procedure recommended?

In the case of a wound l recurrence after radical breast cancer and sentinel lymph node biopsy. Are the sentinel lymph node procedure recommended? If no axillary lymph node dissection was not...

05 August 2024 8,056 1 View

Regarding a model for simulating battery charge and discharge, what do you consider to be high fidelity?

Regarding a model for simulating battery charge and discharge, what do you consider to be high fidelity? What is the acceptable percentage of error (regardless of the metric)? Could you suggest...

03 August 2024 5,358 0 View

Interested in a SCOPUS collaboration?

Hi RG family. My team and I are working on some SCOPUS publications and we need co-authors who are willing and capable of undertaking both qualitative and quantitative-based studies. The scope...

02 August 2024 7,843 0 View