I'm trying to use GridMAT to get the area per lipid and thickness so I installed activeperl on my laptop (on windows) and put the three necessary files in and ran this command:
> perl GridMAT-MD.pl param_example
It doesn't give me any valuable output.
#### I attach perl screen and its error ####
Would you help me please to get the desired results?
GridMAT commands
perl GridMAT-MD.pl param_example
perl convert_to_gnuplot.pl output.frame1.20x20.average_thickness.dat 20 20
gnuplot> splot 'C:\Users\path_name\output_gnuplot.dat' matrix using (1+$1):(1+$2):3
gnuplot> set pm3d map
gnuplot> replot
P.S. Use the attached perl script and try again.
Good luck
Thank you very much for gridMAT commands but I did not get any output from the first step yet...!!!
please use this code:
https://github.com/emptyewer/GridMAT-MD-parallel/blob/master/bilayer_analysis_param
- Badges
- Science topic
- Similar topics
- Bioinformatics
- Bioinformatics and Computational Biology