Hello there. I have a list of proteins from a metaproteomic study (most of them belonging to prokaryotes) and I want to "Blast" them against a database to obtain Gene Onthology information.

I am using Blast2GO software, which allow selecting different reference databases (NCBI, Swissprot, refseqs...), and I was wondering if there is one databse that is better than the others to do what I want.

Thanks

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