Batch query to determine syntenic region between human and mouse genomes?

11 January 2018 1 3K Report

i tried the UCSC lift over tool to find syntenic region been human and mouse genomes using the respective genomic coordinates. That tool however give half the queries as missing synteny. Is there another way to recheck this genome liftover say using Ensemble or any other software?

thanks

Mrigaya Mehra

There is another tool named Symap which gives good results for syntenic regions. It is however a little time taking

http://www.agcol.arizona.edu/software/symap/

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