25 January 2013 1 2K Report

I have MD simulated a homology model in gromacs. I have obtained an RMS fluctuation graph for the same. Can this graph be compared with a PDB file which has b-factors generated during X-ray crystallography of it? As a 5 aa loop in my model is having high fluctuation can I relate this loop with B-factors in a pdb file for the same aligned loop?

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