Hi, I am running a test docking for 3DTC protein and Vin inhibitor (both taken from PDB). I think I have taken the correct steps before running both Autdock and Autogrid. I do not encounter any window showing python errors. Still, at the same time, the autodock process manager does not pop up (at least not long enough compared to videos I have seen, it only flashes then disappears) whenever I try to run my samples. I also do not get any result files from autodock and autogrid run.
Do you also know another software/server that I could use as an alternative to auto dock? thanks
Hello..I have also faced this issue..I think you should uninstall all the programmes than reinstall it.. Have you downloaded the mgl tools? Go through any youtube tutorial before installing.
There are several alternatives that you can use..iGemdock, pyrax..
Recently some group of scientists have developed AMdock.. versatile graphical tool for assisting molecular docking with Autodock Vina and Autodock4. If you wish you may go through this paper : https://doi.org/10.1186/s13062-020-00267-2
Doi
Samik Hazra Hi, I have downloaded the MGL tools. I will try to uninstall them
It can happen due to several reasons (re-installing might not fix the issue)..
1. proper steps followed or not
2. always rename the files without spaces (use "_" if required)
3. Parameter file should have parameters for the atoms in the workspace.
These are some of the reasons..
Regards
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