Take for example the deeper meaning of differentiation: the local existence of a linear mapping that locally linearizes the nonlinear function. This is apparent in functions of one or many variables and also in vector functions. Take a look at the dynamical systems: when things are too difficult we always study the linearized version by the relevant Jacobian. Look at general relativity: all tensors are differential operators of differential geometry, i.e. locally linear concepts. Continue on quantum field theory: everything is inside a proper linear space and linearization is everywhere.
Can anyone find even one branch of modern science that is not linear or at least linearizable? I doubt it. So, the question is:
After so many centuries of linear science are we still satisfied with this paradigm?