Hello

see  links here , may help you

Good Luck

http://www.nature.com/nature/journal/vaop/ncurrent/abs/nature13395.html

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4250274/

http://flybase.org/static_pages/allied-data/external_resources5.html

http://nar.oxfordjournals.org/content/early/2014/11/14/nar.gku1099.full

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2206065/

http://fruitfly.org/

Arko,

You should be able to obtain the coordinates of all or almost all published Drosophila enhancers from Marc Halfon's database REDfly at

http://redfly.ccr.buffalo.edu

Good luck!

Just make sure the genome releases are the same. dm3 is still the latest, but if you're also looking at genes / intersections, you will need to make sure that you stick to one source. Ensembl, UCSC and FlyBase are all very different...I recommend FlyBase.

Thanks for the help, the information here should get the ball rolling