Our lab is attempting to study trans-infection of HIV-1 from primary Alveolar macrophages. The Alveolar macs are provided from HIV+ BAL samples. Issues are that the cultures are obviously contaminated with fungi and bacteria from the patients nose, mouth, trachea, etc.
Are there any means to prevent contaminants from exploding in the culture media as trans-infection assays take several days to complete??? These cultures are heavily contaminated with what seems to be fungi by light microscopy.
Also, any advice on general culturing of Alveolar macrophages is most welcome. Much obliged and thanks.